I can say what was going through my head.
The scenario I described is a bit of a test of the camera's autofocus / available focus aids / the user's skill.
To repeat, that scenario was photographing a static object 3m away at 135mm f/2 on an FF camera. Depending on your personal idea of depth-of-field, this scenario might imply a depth-of-field of something like 3-5cm. The field-of view in the plane of focus will be about 0.8m x 0.5m, so magnification is about 1/20.
If we'real picky about focus in this scenario, we can mount the camera in the middle of the travel of a macro rail and then focus.
We can probably confirm we're close to the focus we want by taking a picture, and checking the magnified captured image.
If we now lock the focus (assuming that's possible with a modern fly-by-wire lens) we can maybe divide our depth of field estimate by - say - 10, and use that distance as a step between half-a-dozen macro rail positions either side of our initial position on the rail. Then either focus stack, or choose whichever looks best.
I think Jim Kasson wrote some stuff about the effect of defocus on MTF.